Large-scale project iSenseDNA launched

New EU project focuses advanced biotechnology

Understanding how a specific molecule behaves during complex biological processes is a challenge facing biomedical research, despite major biotechnological progress made in recent years. A major new EU project, iSenseDNA, is now focusing on developing a technology to identify what a change in the structure of a molecule could entail for its function. The new EIC pathfinder project, coordinated by Uppsala University, joins researchers from 8 universities, research centres and companies from six countries.

The iSenseDNA team at the kick-off meeting in October at the University of Padua (Italy). (Photo: © Univ. Uppsala)

The researchers in the iSenseDNA project want to develop technology that can connect changes in a biomolecule’s structure to its function during complex dynamic processes in real time. Technologies currently exist to help study how a certain molecule functions during a biological process, and there are technologies for studying the structure of molecules in detail. However, none has managed to connect structure to function on a large scale. This makes it difficult to predict which structural changes are needed to improve a drug, for example.

Of vital importance for the project will be the fast non-invasive optical readout of biomolecular samples. At DESY, researchers explore how this can be achieved leveraging photonic ultrafast light sources. “Such light sources can in principle be integrated on photonic chips and may lead to new compact and low-cost precision sensors”, says Tobias Herr who is leading the team at DESY.

In the project, the researchers will combine computational and biotechnological methods as tools for advanced optical analysis of biomolecules “in action”. Together they want to develop a so-called nano-transducer, a DNA-based sensor that is sensitive to structural changes and can read these in real-time.

“This multidisciplinary project establishes a collaboration between different fields and technologies that has the potential to extract otherwise well-hidden information about complex processes, which will eventually contribute to advances in medical diagnostics and treatment,” says Lynn Kamerlin (Uppsala University), one of the coordinators of the project.

The researchers within iSenseDNA come from universities (Uppsala, Umeå, and Padova universities), research centres (CNR, BIO, DESY, ESRF), and a company (OrganoTherapeutics, OT) across Europe (Sweden, Italy, Spain, Germany, Luxembourg, France). The project has a total budget of approximately three million euros and is financed by the European Innovation Council within the framework of the EIC pathfinder Open Call.

More News

To illustrate the type of environments in which gold nanoparticles can be used, the nanoparticles approach densely packed regions of proteins. (Image: Ferdinand Otto, UHH)
To illustrate the type of environments in which gold nanoparticles can be used, the nanoparticles approach densely packed regions of proteins. (Image: Ferdinand Otto, UHH)

"Stealth Effect"

An experiment led by a team of DESY and Universität Hamburg scientists has discovered that gold nanoparticles can move through liquid ...

Read more …
Johanna Hakanpää, scientist in charge of beamline P11, in conversation with Serghei Glinca, founder and CEO of CrystalsFirst. ( Photo: DESY)
Johanna Hakanpää, scientist in charge of beamline P11, in conversation with Serghei Glinca, founder and CEO of CrystalsFirst. ( Photo: DESY)

Cooperation for faster drug discovery

The mutual project “LigandML” receives funding by the IFB Hamburg aiming to leverage experimental capabilities for better data quality paired ...

Read more …
From left to right: a pollen grain collected at DESY, a diatom, and a cyanobacterium, all imaged using Compton X-ray Scattering Microscopy at PETRA III.
From left to right: a pollen grain collected at DESY, a diatom, and a cyanobacterium, all imaged using Compton X-ray Scattering Microscopy at PETRA III. (Image: ©DESY/CFEL)

Biological specimens imaged with X-rays without damage

A pollen grain showing the nanofoam within or a diatom with the individual geometric structures inside clearly visible: Using high-energy X-rays from the PETRA III ...

Read more …